view otutable_split_by_sample.xml @ 0:607c5e7e0a64 draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5

<tool id="mycrobiota-split-multi-otutable" name="Split multisample OTUtable" version="0.1">
    <description>into a table persample</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <command detect_errors="aggressive"><![CDATA[
        python '$__tool_directory__/mycrobiota.py'
            --command split_multi_otutable
            --otutable '$otutable'
    ]]></command>
    <inputs>
        <param argument="--otutable" type="data" format="tabular" label="Supply a multisaple OTU table" help="expects sample as first part of name e.g. samplename_replicate2_rest"/>
    </inputs>
    <outputs>
        <collection name="sample_otutables" type="list" label="${tool.name} on ${on_string}: per-sample otu tables">
            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.otutable" format="tabular"/>
        </collection>
    </outputs>
    <tests>
        <test>
            <param name="otutable" value="multisample.otutable" ftype="tabular"/>
            <output_collection name="sample_otutables" count="3">
                <element name="DX01" file="DX01.otutable" ftype="tabular"/>
            </output_collection>
        </test>
    </tests>
    <help><![CDATA[
        help text goes here
    ]]></help>
    <expand macro="citations"/>
</tool>