view init_sibelia.xml @ 2:74df95d8152a draft

It works

<tool id="Sibelia" name="sibelia">
  <command interpreter="python">Sibelia_wrapper.py $input </command>
  <inputs>
    <param name="input" size="100" type="text" label="Input parameters"/>
  </inputs>
  <outputs>
		<data format="txt" name="outperm" label="Genomes permutations" from_work_dir="genomes_permutations.txt" />
		<data format="txt" name="outblc" label="Blocks coords" from_work_dir="blocks_coords.txt" />
	</outputs>
</tool>