diff run_test.sh @ 0:bab3a658f74e draft

planemo upload commit 91805bf8e8ce26193ffc4cc2f3dca56ce4addf79

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/run_test.sh	Tue May 09 18:34:35 2017 -0400
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+# purge old output files
+if [ -f test_log.txt ]; then rm test_log.txt; fi
+if [ -f tool_test_output.html ]; then rm tool_test_output.html; fi
+if [ -f tool_test_output.json ]; then rm tool_test_output.json; fi
+
+# run test and write new output files, showing progress to command line output
+planemo conda_install .
+planemo test --conda_dependency_resolution w4mclassfilter.xml 2>&1 | grep -v -i observer | tee test_log.txt
+
+# summarize warnings and errors to command line output
+grep -E "(ERROR)|(WARNING)" test_log.txt | grep -v samtools | grep -v "Dynamic Display Application links" | grep -v "twobit.loc"