comparison w4mcorcov.xml @ 11:ddcc33ff3205 draft

planemo upload for repository https://github.com/HegemanLab/w4mcorcov_galaxy_wrapper/tree/master commit 4428e3252d54c8a8e0e5d85e8eaaeb13e9b21de7

10:9a52306991b3

<tool id="w4mcorcov" name="OPLS-DA_Contrasts" version="0.98.14">
    <description>OPLS-DA Contrasts of Univariate Results</description>
    <macros>
        <xml name="paramPairSigFeatOnly">
            <param name="pairSigFeatOnly" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE"
                label="Retain only pairwise-significant features"

          <has_text text="covariance" />
          <has_text text="vip4p" />
          <has_text text="vip4o" />
          <!-- first matched line -->
          <has_text text="M349.2383T700" />
          <has_text text="-0.37867079" />
          <has_text text="-37.71066" />
          <has_text text="0.5246766" />
          <has_text text="0.0103341" />
          <!-- second matched line -->
          <has_text text="M207.9308T206" />
          <has_text text="0.31570433" />
          <has_text text="5.86655640" />
          <has_text text="0.2111623" />
          <has_text text="0.0488654" />
        </assert_contents>
      </output>
    </test>
    <!-- test #6 -->
    <test>
      <param name="dataMatrix_in" value="input_dataMatrix.tsv"/>
      <param name="sampleMetadata_in" value="issue6_input_sampleMetadata.tsv"/>
      <param name="variableMetadata_in" value="input_variableMetadata.tsv"/>
      <param name="tesC" value="none"/>

          <has_text text="M349.2383T700" />
          <has_text text="-0.0435663" />
          <has_text text="-1.9068114" />
          <has_text text="0.0304592" />
          <has_text text="0.104748883" />
        </assert_contents>
      </output>
    </test>
  </tests>
  <help><![CDATA[

11:ddcc33ff3205

<tool id="w4mcorcov" name="OPLS-DA_Contrasts" version="0.98.15">
    <description>OPLS-DA Contrasts of Univariate Results</description>
    <macros>
        <xml name="paramPairSigFeatOnly">
            <param name="pairSigFeatOnly" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE"
                label="Retain only pairwise-significant features"

          <has_text text="covariance" />
          <has_text text="vip4p" />
          <has_text text="vip4o" />
          <!-- first matched line -->
          <has_text text="M349.2383T700" />
          <has_text text="0.43361563" />
          <has_text text="37.76875778" />
          <has_text text="0.54672558" />
          <has_text text="0.3920409" />
          <!-- second matched line -->
          <has_text text="M207.9308T206" />
          <has_text text="-0.3365475" />
          <has_text text="-6.337903" />
          <has_text text="0.270297" />
          <has_text text="0.037661" />
        </assert_contents>
      </output>
    </test>
    <!-- test #6 - issue 6 -->
    <test>
      <param name="dataMatrix_in" value="input_dataMatrix.tsv"/>
      <param name="sampleMetadata_in" value="issue6_input_sampleMetadata.tsv"/>
      <param name="variableMetadata_in" value="input_variableMetadata.tsv"/>
      <param name="tesC" value="none"/>

          <has_text text="M349.2383T700" />
          <has_text text="-0.0435663" />
          <has_text text="-1.9068114" />
          <has_text text="0.0304592" />
          <has_text text="0.104748883" />
        </assert_contents>
      </output>
    </test>
    <!-- test #6 - issue 8 -->
    <test>
      <param name="dataMatrix_in" value="input_dataMatrix.tsv"/>
      <param name="sampleMetadata_in" value="issue8_input_sampleMetadata.tsv"/>
      <param name="variableMetadata_in" value="input_variableMetadata.tsv"/>
      <param name="tesC" value="none"/>
      <param name="facC" value="k._10"/>
      <param name="labelFeatures" value="3"/>
      <param name="levCSV" value="k_3,k-4"/>
      <param name="matchingC" value="none"/>
      <output name="contrast_corcov">
        <assert_contents>
          <!-- column-labels line -->
          <has_text text="featureID" />
          <has_text text="factorLevel1" />
          <has_text text="factorLevel2" />
          <has_text text="correlation" />
          <has_text text="covariance" />
          <has_text text="vip4p" />
          <has_text text="vip4o" />
          <!-- k1 rejected by levCSV, leaving only k_3 and k-4 -->
          <not_has_text text="k1" />
          <not_has_text text="other" />
        </assert_contents>
      </output>
    </test>
  </tests>
  <help><![CDATA[