comparison vkmz.xml @ 11:797bbf003bd4 draft

planemo upload for repository https://github.com/HegemanLab/VKMZ commit 722cd42705f87f2dc11aa6984ae0836ad4ca41a6-dirty

10:b3055eaa7c9c

        <option value="NA">No override</option>
        <option value="negative">Negative</option>
        <option value="positive">Positive</option>
      </param>
      <param name="neutral" label="Disable polarity based mass adjustment" type="boolean" truevalue="True" help="Use this option if data contains neutral masses." />
      <param name="alternate" label="Keep feature's with more than one prediction" type="boolean" truevalue="False" help="Keeping features with multiple predictions raises the false discovery rate." />
      <param name="impute_charge" label="Impute Charge" type="boolean" truevalue="True" help="If impute data in annotated with charge information, features with no (null) charge valeus are removed. Setting Impute Charge to True imputes a charge for all of these features instead." />
    </section>
    <section name="prediction" title="Prediction Options" expanded="true">
      <param name="error" label="Mass Error (PPM)" type="float" value="10.0" min="0" help="Set according to expected mass error in parts-per-million" />
      <conditional name="database_type">

11:797bbf003bd4

        <option value="NA">No override</option>
        <option value="negative">Negative</option>
        <option value="positive">Positive</option>
      </param>
      <param name="neutral" label="Disable polarity based mass adjustment" type="boolean" truevalue="True" help="Use this option if data contains neutral masses." />
      <param name="alternate" label="Keep features with more than one prediction" type="boolean" truevalue="True" help="Keeping features with multiple predictions raises the false discovery rate." />
      <param name="impute_charge" label="Impute Charge" type="boolean" truevalue="True" help="If impute data in annotated with charge information, features with no (null) charge valeus are removed. Setting Impute Charge to True imputes a charge for all of these features instead." />
    </section>
    <section name="prediction" title="Prediction Options" expanded="true">
      <param name="error" label="Mass Error (PPM)" type="float" value="10.0" min="0" help="Set according to expected mass error in parts-per-million" />
      <conditional name="database_type">