comparison vkmz.xml @ 8:a6744d496f03 draft

planemo upload for repository https://github.com/HegemanLab/VKMZ commit 722cd42705f87f2dc11aa6984ae0836ad4ca41a6-dirty

7:b0ce669ce794

    #if $advanced_input.neutral == "True":
      --neutral
    #end if
    #if $advanced_input.alternate == "True":
      --alternate
    #end if
    #if $advanced_output.json == "True":
      --json
    #end if
    #if $advanced_output.sql == "True":
      --sql
    #end if
  ]]></command>

  <inputs>
    <conditional name="mode">

        <when value="custom">
          <param name="database" label="Database" type="data" format="tabular" help="Select a custom tabular database" />
        </when>
      </conditional>
    </section>
    <section name="advanced_output" title="Advanced Output Options" expanded="false">
      <param name="json" label="JSON" type="boolean" truevalue="False" help="Save results to JSON." />
      <param name="sql" label="SQL" type="boolean" truevalue="False" help="Save results to sqlite." />
    </section>
  </inputs>
  <outputs>
    <data format="tabular" name="output_tabular" from_work_dir="vkmz.tabular" label="${tool.name}_${mode.mode_selector}_tabular" />
    <data format="html" name="output_html" from_work_dir="vkmz.html" label="${tool.name}_${mode.mode_selector}_html" />
    <data format="json" name="output_json" from_work_dir="vkmz.json" label="${tool.name}_${mode.mode_selector}_json" />
    <data format="sqlite" name="output_sqlite" from_work_dir="vkmz.db" label="${tool.name}_${mode.mode_selector}_sqlite" />
  </outputs>

  <tests>
    <test>
      <conditional name="mode">

8:a6744d496f03

    #if $advanced_input.neutral == "True":
      --neutral
    #end if
    #if $advanced_input.alternate == "True":
      --alternate
    #end if
  ]]></command>

  <inputs>
    <conditional name="mode">

        <when value="custom">
          <param name="database" label="Database" type="data" format="tabular" help="Select a custom tabular database" />
        </when>
      </conditional>
    </section>
  </inputs>
  <outputs>
    <data format="tabular" name="output_tabular" from_work_dir="vkmz.tabular" label="${tool.name}_${mode.mode_selector}_tabular" />
    <data format="html" name="output_html" from_work_dir="vkmz.html" label="${tool.name}_${mode.mode_selector}_html" />
  </outputs>

  <tests>
    <test>
      <conditional name="mode">