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comparison vkmz.xml @ 10:b3055eaa7c9c draft

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planemo upload for repository https://github.com/HegemanLab/VKMZ commit 722cd42705f87f2dc11aa6984ae0836ad4ca41a6-dirty
author eslerm
date Thu, 20 Dec 2018 13:36:56 -0500
parents 1a789d810eb7
children 797bbf003bd4
comparison
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9:1a789d810eb7 10:b3055eaa7c9c
20 --variable-metadata $mode.variablemetadata 20 --variable-metadata $mode.variablemetadata
21 #elif str( $mode.mode_selector ) == "tabular": 21 #elif str( $mode.mode_selector ) == "tabular":
22 tabular 22 tabular
23 --input $mode.input 23 --input $mode.input
24 #end if 24 #end if
25 --error $prediction.error
26 --database $prediction.database_type.database
27 --output vkmz
28 #if $advanced_input.polarity == "negative": 25 #if $advanced_input.polarity == "negative":
29 --polarity negative 26 --polarity negative
30 #else if $advanced_input.polarity == "positive": 27 #else if $advanced_input.polarity == "positive":
31 --polarity positive 28 --polarity positive
32 #end if 29 #end if
33 #if $advanced_input.impute_charge == "True": 30 #if $advanced_input.impute_charge == "True":
34 --impute-charge 31 --impute-charge
35 #end if 32 #end if
33 #if $advanced_input.alternate == "True":
34 --alternate
35 #end if
36 #if $advanced_input.neutral == "True": 36 #if $advanced_input.neutral == "True":
37 --neutral 37 --neutral
38 #end if 38 #end if
39 #if $advanced_input.alternate == "True": 39 --error $prediction.error
40 --alternate 40 --database $prediction.database_type.database
41 #end if 41 --output vkmz
42 ]]></command> 42 ]]></command>
43 43
44 <inputs> 44 <inputs>
45 <conditional name="mode"> 45 <conditional name="mode">
46 <param name="mode_selector" type="select" label="Input Data"> 46 <param name="mode_selector" type="select" label="Input Data">