# HG changeset patch
# User eslerm
# Date 1545331016 18000
# Node ID b3055eaa7c9c6ab7ba58b25a007d69299caf869a
# Parent  1a789d810eb705de66c1bc93e6db96f7617b2194
planemo upload for repository https://github.com/HegemanLab/VKMZ commit 722cd42705f87f2dc11aa6984ae0836ad4ca41a6-dirty

diff -r 1a789d810eb7 -r b3055eaa7c9c vkmz.xml
--- a/vkmz.xml	Thu Dec 20 01:26:41 2018 -0500
+++ b/vkmz.xml	Thu Dec 20 13:36:56 2018 -0500
@@ -22,9 +22,6 @@
       tabular
       --input $mode.input
     #end if
-    --error $prediction.error
-    --database $prediction.database_type.database
-    --output vkmz
     #if $advanced_input.polarity == "negative":
       --polarity negative
     #else if $advanced_input.polarity == "positive":
@@ -33,12 +30,15 @@
     #if $advanced_input.impute_charge == "True":
       --impute-charge
     #end if
+    #if $advanced_input.alternate == "True":
+      --alternate
+    #end if
     #if $advanced_input.neutral == "True":
       --neutral
     #end if
-    #if $advanced_input.alternate == "True":
-      --alternate
-    #end if
+    --error $prediction.error
+    --database $prediction.database_type.database
+    --output vkmz
   ]]></command>
 
   <inputs>