Mercurial > repos > estrain > add_header
comparison add_header.xml @ 2:0c9a80d52e0b draft
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author | estrain |
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date | Tue, 30 Oct 2018 13:26:45 -0400 |
parents | 9562cf49ccaa |
children | 61d3765f4070 |
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1:24ce8dc4b5e7 | 2:0c9a80d52e0b |
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1 <tool id="add_header" name="add_header" version="0.1"> | |
2 <description>Add header row to tabular data</description> | |
3 <requirements> | |
4 </requirements> | |
5 <command detect_errors="exit_code"><![CDATA[ | |
6 | |
7 echo $header | sed s/\,/\\t/g > new_header.txt; | |
8 cat new_header.txt $datatable > output.tab | |
9 | |
10 ]]></command> | |
11 <inputs> | |
12 <param name="header" type="text" label="List of Column headers (comma delimited, e.g. C1,C2,...)"/> | |
13 <param name="datatable" type="data" format="tabular" label="Data File (tab-delimted)"/> | |
14 </inputs> | |
15 <outputs> | |
16 <data format="tabular" name="Data Table" label="${tool.name} on ${on_string}" from_work_dir="*.tab"/> | |
17 </outputs> | |
18 | |
19 <help><![CDATA[ | |
20 | |
21 ]]></help> | |
22 <citations> | |
23 </citations> | |
24 </tool> |