Mercurial > repos > estrain > data_manager_amrfinderplus
view data_manager_amrfinderplus/data_manager/data_manager_amrfinderplus.xml @ 12:1ce80c2938fe draft
Uploaded
author | estrain |
---|---|
date | Tue, 24 May 2022 00:23:02 +0000 |
parents | 650186ccc063 |
children | 5db01cd3bf81 |
line wrap: on
line source
<tool id="data_manager_amrfinderplus" name="AMRFinderPlus Data Manger" tool_type="manage_data" version="0.0.3" profile="20.01"> <requirements> <requirement type="package">blast</requirement> <requirement type="package">hmmer</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python $__tool_directory__/data_manager_amrfinderplus.py --name $amrdbname --out ${output_file}; ]]></command> <inputs> <param name="amrdbname" type="text" value="latest" label="Release Version - Note: only latest release is supported"/> </inputs> <outputs> <data name="output_file" format="data_manager_json"/> </outputs> <tests> <test> </test> </tests> <help> </help> <citations> Refer to https://ftp.ncbi.nlm.nih.gov/pathogen/Antimicrobial_resistance/AMRFinderPlus/database/latest/ for latest database version number. </citations> </tool>