Mercurial > repos > estrain > data_manager_mlst

changeset 3:ca2796b20a47 draft

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Uploaded
author estrain
date Mon, 05 May 2025 18:35:33 +0000
parents 1930c02df64e
children 48952067f42e
files data_manager_mlst/data_manager/data_manager_mlst.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_mlst/data_manager/data_manager_mlst.xml	Thu Jan 18 03:11:43 2024 +0000
+++ b/data_manager_mlst/data_manager/data_manager_mlst.xml	Mon May 05 18:35:33 2025 +0000
@@ -4,6 +4,8 @@
         <requirement type="package">mlst</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
+        export SCRIPT_DIR=$(dirname $(which mlst))/../scripts &&
+        export PATH=$PATH:$SCRIPT_DIR &&
         python $__tool_directory__/data_manager_mlst.py --out ${output_file};
     ]]></command>
     <inputs>