# HG changeset patch
# User estrain
# Date 1705664849 0
# Node ID 5083f8406e3404d5519c9a6477e488f08ebb0477
# Parent  9c5e62562c87c959adbb06ac3408e4e18ca6490c
Uploaded

diff -r 9c5e62562c87 -r 5083f8406e34 microrunqc.xml
--- a/microrunqc.xml	Thu Jan 18 20:20:40 2024 +0000
+++ b/microrunqc.xml	Fri Jan 19 11:47:29 2024 +0000
@@ -105,7 +105,7 @@
     #end if
     ${outname}.fasta > ${outname}.mlst_raw.tsv;
     
-    perl $__tool_directory__/mlstAddFields.pl ${outname}.mlst_raw.tsv > ${outname}.mlst.tsv;
+    python $__tool_directory__/mlstAddFields.py ${outname}.mlst_raw.tsv $mlst_databases.fields.path/pubmlst > ${outname}.mlst.tsv;
 
     python $__tool_directory__/run_fastq_scan.py --fastq ${bwalist} --out fq_out.tab --type ${fqscan};