Mercurial > repos > estrain > microrunqc
changeset 25:4f457838f4c9 draft default tip
Fixed missing tab in MLST report
| author | estrain |
|---|---|
| date | Wed, 28 Feb 2024 01:16:18 +0000 |
| parents | dc12d6ac296d |
| children | |
| files | microrunqc/microrunqc.xml microrunqc/mlstAddFields.py |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/microrunqc/microrunqc.xml Fri Feb 02 15:16:46 2024 +0000 +++ b/microrunqc/microrunqc.xml Wed Feb 28 01:16:18 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="microrunqc" name="microrunqc" version="1.0.3"> +<tool id="microrunqc" name="microrunqc" version="1.0.4"> <requirements> <requirement type="package" version="2.4.0">skesa</requirement>
--- a/microrunqc/mlstAddFields.py Fri Feb 02 15:16:46 2024 +0000 +++ b/microrunqc/mlstAddFields.py Wed Feb 28 01:16:18 2024 +0000 @@ -21,7 +21,7 @@ if schema == "-": print("\t".join(mlstout)) return - + if db_path is None: # If no database path is provided, find it using an external command # This requires the 'mlst' command to be installed and available in the path @@ -62,6 +62,8 @@ output = mlstout[:3] if mlstST in schema_dict: output.append(schema_dict[mlstST]) + else: + output.append("-") output.extend(mlstout[3:]) print("\t".join(output))