Mercurial > repos > ethevenot > batchcorrection
annotate build.xml @ 0:b74d1d533dea draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
author | ethevenot |
---|---|
date | Thu, 04 Aug 2016 11:40:35 -0400 |
parents | |
children |
rev | line source |
---|---|
0
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
1 <project name="batchcorrection" default="all"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
2 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
3 <property name="tool.xml" value="batch_correction.xml"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
4 <property name="conda.dir" value="${user.home}/w4m-conda"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
5 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
6 <!--~~~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
7 ~ ALL ~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
8 ~~~~~--> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
9 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
10 <target name="all"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
11 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
12 <!--~~~~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
13 ~ TEST ~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
14 ~~~~~--> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
15 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
16 <target name="test" depends="planemo.lint,planemo.test"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
17 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
18 <!--~~~~~~~~~~~~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
19 ~ PLANEMO LINT ~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
20 ~~~~~~~~~~~~~--> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
21 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
22 <target name="planemo.lint"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
23 <exec executable="planemo" failonerror="true"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
24 <arg value="lint"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
25 <arg value="${tool.xml}"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
26 </exec> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
27 </target> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
28 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
29 <!--~~~~~~~~~~~~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
30 ~ PLANEMO TEST ~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
31 ~~~~~~~~~~~~~--> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
32 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
33 <target name="planemo.test" depends="planemo.conda.install"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
34 <exec executable="planemo" failonerror="true"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
35 <arg value="test"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
36 <arg value="--conda_prefix"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
37 <arg value="${conda.dir}"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
38 <arg value="--galaxy_branch"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
39 <arg value="release_16.01"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
40 <arg value="--conda_dependency_resolution"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
41 <arg value="${tool.xml}"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
42 </exec> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
43 </target> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
44 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
45 <!--~~~~~~~~~~~~~~~~~~~~~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
46 ~ PLANEMO CONDA INSTALL ~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
47 ~~~~~~~~~~~~~~~~~~~~~~--> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
48 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
49 <target name="planemo.conda.install" depends="planemo.conda.init"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
50 <exec executable="planemo" failonerror="true"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
51 <arg value="conda_install"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
52 <arg value="--conda_prefix"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
53 <arg value="${conda.dir}"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
54 <arg value="${tool.xml}"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
55 </exec> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
56 </target> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
57 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
58 <!--~~~~~~~~~~~~~~~~~~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
59 ~ PLANEMO CONDA INIT ~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
60 ~~~~~~~~~~~~~~~~~~~--> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
61 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
62 <target name="planemo.conda.init"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
63 <exec executable="planemo" failonerror="true"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
64 <arg value="conda_init"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
65 <arg value="--conda_prefix"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
66 <arg value="${conda.dir}"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
67 </exec> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
68 </target> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
69 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
70 <!--~~~~~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
71 ~ CLEAN ~ |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
72 ~~~~~~--> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
73 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
74 <target name="clean"> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
75 <delete dir="${conda.dir}"/> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
76 </target> |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
77 |
b74d1d533dea
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit 241fb99a843e13195c5054cd9731e1561f039bde
ethevenot
parents:
diff
changeset
|
78 </project> |