diff test/test-biosigner @ 3:fa80bd02055f draft default tip

planemo upload for repository https://github.com/workflow4metabolomics/biosigner.git commit 23d58cfd97411ad5d272971896914ce99e30b0ab

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test/test-biosigner	Tue Jun 06 11:44:00 2017 -0400
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+# Constants {{{1
+################################################################
+
+PROG_PATH=$(dirname $0)
+
+# MAIN {{{1
+################################################################
+
+$PROG_PATH/../biosigner_wrapper.R dataMatrix_in $PROG_PATH/../test-data/dataMatrix.tsv sampleMetadata_in $PROG_PATH/../test-data/sampleMetadata.tsv variableMetadata_in $PROG_PATH/../test-data/variableMetadata.tsv respC gender opcC full methodC all bootI 5 tierC S pvalN 0.05 seedI 123 variableMetadata_out $PROG_PATH/outputVariableMetadata.tsv
+
+if ! diff "$PROG_PATH/outputVariableMetadata.tsv" "$PROG_PATH/../test-data/variableMetadata.out" ; then
+	echo "Incorrect output variable metadata." >&2
+	exit 1
+fi