annotate build.xml @ 1:e194eec8e70c draft

planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 8ebfbfa8d9449c9bbfbf569851a30b1e33df0b3f
author ethevenot
date Sat, 06 Aug 2016 11:54:28 -0400
parents 0d8099822c49
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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1 <project name="checkformat" default="all">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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2
1
e194eec8e70c planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 8ebfbfa8d9449c9bbfbf569851a30b1e33df0b3f
ethevenot
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3 <property name="tool.xml" value="checkformat_config.xml"/>
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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6 <!--~~~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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7 ~ ALL ~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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8 ~~~~~-->
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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10 <target name="all"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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12 <!--~~~~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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13 ~ TEST ~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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14 ~~~~~-->
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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16 <target name="test" depends="planemo.lint,planemo.test"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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18 <!--~~~~~~~~~~~~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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19 ~ PLANEMO LINT ~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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20 ~~~~~~~~~~~~~-->
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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22 <target name="planemo.lint">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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23 <exec executable="planemo" failonerror="true">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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24 <arg value="lint"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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25 <arg value="${tool.xml}"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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26 </exec>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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27 </target>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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29 <!--~~~~~~~~~~~~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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30 ~ PLANEMO TEST ~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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31 ~~~~~~~~~~~~~-->
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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33 <target name="planemo.test" depends="planemo.conda.install">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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34 <exec executable="planemo" failonerror="true">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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35 <arg value="test"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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36 <arg value="--conda_prefix"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
diff changeset
37 <arg value="${conda.dir}"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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38 <arg value="--galaxy_branch"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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39 <arg value="release_16.01"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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40 <arg value="--conda_dependency_resolution"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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41 <arg value="${tool.xml}"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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42 </exec>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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43 </target>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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45 <!--~~~~~~~~~~~~~~~~~~~~~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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46 ~ PLANEMO CONDA INSTALL ~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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47 ~~~~~~~~~~~~~~~~~~~~~~-->
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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48
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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49 <target name="planemo.conda.install" depends="planemo.conda.init">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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50 <exec executable="planemo" failonerror="true">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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51 <arg value="conda_install"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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52 <arg value="--conda_prefix"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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53 <arg value="${conda.dir}"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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54 <arg value="${tool.xml}"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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55 </exec>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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56 </target>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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57
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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58 <!--~~~~~~~~~~~~~~~~~~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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59 ~ PLANEMO CONDA INIT ~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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60 ~~~~~~~~~~~~~~~~~~~-->
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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61
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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62 <target name="planemo.conda.init">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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63 <exec executable="planemo" failonerror="true">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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64 <arg value="conda_init"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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65 <arg value="--conda_prefix"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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66 <arg value="${conda.dir}"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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67 </exec>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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68 </target>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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69
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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70 <!--~~~~~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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71 ~ CLEAN ~
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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72 ~~~~~~-->
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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73
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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74 <target name="clean">
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
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75 <delete dir="${conda.dir}"/>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
ethevenot
parents:
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76 </target>
0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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0d8099822c49 planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
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78 </project>