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planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 217d97da5c733c3628997666c73867e81af0a0ee
author ethevenot
date Sat, 30 Jul 2016 12:06:35 -0400
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1 ## Checking the formats of the dataMatrix, sampleMetadata, and variableMetadata files
2 #### A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) project
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4 Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/checkformat.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/checkformat).
5
6 ### Description
7
8 **Version:** 2.0.2
9 **Date:** 2016-07-29
10 **Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team)
11 **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr)
12 **Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354)
13 **Licence:** CeCILL
14 **Reference histories:**
15 [W4M00001a_sacurine-subset-statistics](http://galaxy.workflow4metabolomics.org/history/list_published), [W4M00001b_sacurine_complete](http://galaxy.workflow4metabolomics.org/history/list_published),
16 [W4M00002_sacurine_mtbls2](http://galaxy.workflow4metabolomics.org/history/list_published), [W4M00003_sacurine_diaplasma](http://galaxy.workflow4metabolomics.org/history/list_published)
17 **Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant)
18
19 ### Installation
20
21 * Configuration file: **checkFormat_config.xml**
22 * Image file: **static/images/checkFormat_workflowPositionImage.png**
23 * Wrapper file: **checkFormat_wrapper.R**
24 * R packages
25 + **batch** from CRAN
26 > install.packages("batch", dep=TRUE)
27
28 ### Tests
29
30 The code in the wrapper can be tested by running the **tests/checkFormat_tests.R** in R
31
32 ### News
33
34 ##### CHANGES IN VERSION 2.0.2
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36 INTERNAL MODIFICATION
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38 o Creating tests for R code
39
40 ***