Mercurial > repos > ethevenot > checkformat
comparison checkformat_config.xml @ 2:b6a6b4cc932a draft
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit e17f78630b4d21b54a4edd6015d50969ac859d6b
author | ethevenot |
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date | Tue, 06 Jun 2017 11:51:33 -0400 |
parents | e194eec8e70c |
children | 80a38d36f946 |
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1:e194eec8e70c | 2:b6a6b4cc932a |
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1 <tool id="checkFormat" name="Check Format" version="2.0.4"> | 1 <tool id="checkFormat" name="Check Format" version="2.0.4"> |
2 <description>Checks the formats of the dataMatrix, sampleMetadata, and variableMetadata files</description> | 2 <description>Checks the formats of the dataMatrix, sampleMetadata, and variableMetadata files</description> |
3 | 3 |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="3.2.2">R</requirement> | |
6 <requirement type="package">r-batch</requirement> | 5 <requirement type="package">r-batch</requirement> |
7 </requirements> | 6 </requirements> |
8 | 7 |
9 <stdio> | 8 <stdio> |
10 <exit_code range="1:" level="fatal" /> | 9 <exit_code range="1:" level="fatal" /> |
152 Doi = {10.1021/acs.jproteome.5b00354}, | 151 Doi = {10.1021/acs.jproteome.5b00354}, |
153 Url = {http://pubs.acs.org/doi/full/10.1021/acs.jproteome.5b00354} | 152 Url = {http://pubs.acs.org/doi/full/10.1021/acs.jproteome.5b00354} |
154 }</citation> | 153 }</citation> |
155 <citation type="doi">10.1093/bioinformatics/btu813</citation> | 154 <citation type="doi">10.1093/bioinformatics/btu813</citation> |
156 </citations> | 155 </citations> |
157 | 156 <!-- |
158 | 157 |
159 | 158 |
160 --------------- | |
161 Working example | 159 Working example |
162 --------------- | 160 |
163 | 161 |
164 | 162 |
165 Input files | 163 Input files |
166 =========== | 164 =========== |
167 | 165 |
219 | 217 |
220 variableMetadata name | 218 variableMetadata name |
221 HMDB01032 Dehydroepiandrosterone sulfate | 219 HMDB01032 Dehydroepiandrosterone sulfate |
222 HMDB03072 Quinic acid | 220 HMDB03072 Quinic acid |
223 HMDB00792 Sebacic acid | 221 HMDB00792 Sebacic acid |
224 | 222 --> |
225 | 223 |
226 </tool> | 224 </tool> |