Mercurial > repos > ethevenot > checkformat
comparison checkformat_config.xml @ 2:b6a6b4cc932a draft
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit e17f78630b4d21b54a4edd6015d50969ac859d6b
| author | ethevenot |
|---|---|
| date | Tue, 06 Jun 2017 11:51:33 -0400 |
| parents | e194eec8e70c |
| children | 80a38d36f946 |
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| 1:e194eec8e70c | 2:b6a6b4cc932a |
|---|---|
| 1 <tool id="checkFormat" name="Check Format" version="2.0.4"> | 1 <tool id="checkFormat" name="Check Format" version="2.0.4"> |
| 2 <description>Checks the formats of the dataMatrix, sampleMetadata, and variableMetadata files</description> | 2 <description>Checks the formats of the dataMatrix, sampleMetadata, and variableMetadata files</description> |
| 3 | 3 |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="3.2.2">R</requirement> | |
| 6 <requirement type="package">r-batch</requirement> | 5 <requirement type="package">r-batch</requirement> |
| 7 </requirements> | 6 </requirements> |
| 8 | 7 |
| 9 <stdio> | 8 <stdio> |
| 10 <exit_code range="1:" level="fatal" /> | 9 <exit_code range="1:" level="fatal" /> |
| 152 Doi = {10.1021/acs.jproteome.5b00354}, | 151 Doi = {10.1021/acs.jproteome.5b00354}, |
| 153 Url = {http://pubs.acs.org/doi/full/10.1021/acs.jproteome.5b00354} | 152 Url = {http://pubs.acs.org/doi/full/10.1021/acs.jproteome.5b00354} |
| 154 }</citation> | 153 }</citation> |
| 155 <citation type="doi">10.1093/bioinformatics/btu813</citation> | 154 <citation type="doi">10.1093/bioinformatics/btu813</citation> |
| 156 </citations> | 155 </citations> |
| 157 | 156 <!-- |
| 158 | 157 |
| 159 | 158 |
| 160 --------------- | |
| 161 Working example | 159 Working example |
| 162 --------------- | 160 |
| 163 | 161 |
| 164 | 162 |
| 165 Input files | 163 Input files |
| 166 =========== | 164 =========== |
| 167 | 165 |
| 219 | 217 |
| 220 variableMetadata name | 218 variableMetadata name |
| 221 HMDB01032 Dehydroepiandrosterone sulfate | 219 HMDB01032 Dehydroepiandrosterone sulfate |
| 222 HMDB03072 Quinic acid | 220 HMDB03072 Quinic acid |
| 223 HMDB00792 Sebacic acid | 221 HMDB00792 Sebacic acid |
| 224 | 222 --> |
| 225 | 223 |
| 226 </tool> | 224 </tool> |