Mercurial > repos > ethevenot > checkformat

diff runit/checkformat_runtests.R @ 3:80a38d36f946 draft

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planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit 5cf3f6eb62c1396ade1b068a3dd3cc2e3f827e15
author ethevenot
date Thu, 11 Jan 2018 10:24:56 -0500
parents e194eec8e70c
children
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--- a/runit/checkformat_runtests.R	Tue Jun 06 11:51:33 2017 -0400
+++ b/runit/checkformat_runtests.R	Thu Jan 11 10:24:56 2018 -0500
@@ -82,6 +82,9 @@
     if(file.exists(file.path(dirname(scriptPathC), testInDirC, "variableMetadata.tsv")))
         defaultArgLs[["variableMetadata_in"]] <- file.path(dirname(scriptPathC), testInDirC, "variableMetadata.tsv")
 
+    defaultArgLs[["dataMatrix_out"]] <- file.path(dirname(scriptPathC), testOutDirC, "dataMatrix.tsv")
+    defaultArgLs[["sampleMetadata_out"]] <- file.path(dirname(scriptPathC), testOutDirC, "sampleMetadata.tsv")
+    defaultArgLs[["variableMetadata_out"]] <- file.path(dirname(scriptPathC), testOutDirC, "variableMetadata.tsv")
     defaultArgLs[["information"]] <- file.path(dirname(scriptPathC), testOutDirC, "information.txt")
 
     defaultArgLs