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author ethevenot
date Sat, 30 Jul 2016 12:06:35 -0400
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## Checking the formats of the dataMatrix, sampleMetadata, and variableMetadata files  
#### A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) project

Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/checkformat.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/checkformat).

### Description

**Version:** 2.0.2  
**Date:** 2016-07-29  
**Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team)   
**Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr)  
**Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354)  
**Licence:** CeCILL  
**Reference histories:**  
[W4M00001a_sacurine-subset-statistics](http://galaxy.workflow4metabolomics.org/history/list_published), [W4M00001b_sacurine_complete](http://galaxy.workflow4metabolomics.org/history/list_published),
[W4M00002_sacurine_mtbls2](http://galaxy.workflow4metabolomics.org/history/list_published), [W4M00003_sacurine_diaplasma](http://galaxy.workflow4metabolomics.org/history/list_published)  
**Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant)

### Installation

* Configuration file: **checkFormat_config.xml**
* Image file: **static/images/checkFormat_workflowPositionImage.png**   
* Wrapper file: **checkFormat_wrapper.R**  
* R packages  
    + **batch** from CRAN  
> install.packages("batch", dep=TRUE)   

### Tests

The code in the wrapper can be tested by running the **tests/checkFormat_tests.R** in R  

### News

##### CHANGES IN VERSION 2.0.2  

INTERNAL MODIFICATION  

    o Creating tests for R code  
    
***