# HG changeset patch
# User ethevenot
# Date 1496764293 14400
# Node ID b6a6b4cc932af3a56588ef44ab2c5909261eb090
# Parent  e194eec8e70c347105d3da167d95279e679eac95
planemo upload for repository https://github.com/workflow4metabolomics/checkformat.git commit e17f78630b4d21b54a4edd6015d50969ac859d6b

diff -r e194eec8e70c -r b6a6b4cc932a checkformat_config.xml
--- a/checkformat_config.xml	Sat Aug 06 11:54:28 2016 -0400
+++ b/checkformat_config.xml	Tue Jun 06 11:51:33 2017 -0400
@@ -2,7 +2,6 @@
   <description>Checks the formats of the dataMatrix, sampleMetadata, and variableMetadata files</description>
   
   <requirements>
-    <requirement type="package" version="3.2.2">R</requirement>
     <requirement type="package">r-batch</requirement>
   </requirements>
 
@@ -154,12 +153,11 @@
     }</citation>
     <citation type="doi">10.1093/bioinformatics/btu813</citation>
   </citations>
-
-
+<!--
+  
   
-  ---------------
   Working example
-  ---------------
+  
   
   
   Input files
@@ -221,6 +219,6 @@
   HMDB01032        Dehydroepiandrosterone sulfate
   HMDB03072        Quinic acid
   HMDB00792        Sebacic acid
+-->  
 
-  
 </tool>
diff -r e194eec8e70c -r b6a6b4cc932a checkformat_wrapper.R
--- a/checkformat_wrapper.R	Sat Aug 06 11:54:28 2016 -0400
+++ b/checkformat_wrapper.R	Tue Jun 06 11:51:33 2017 -0400
@@ -60,9 +60,39 @@
     cat("\nEnd of the '", modNamC, "' Galaxy module call: ",
         format(Sys.time(), "%a %d %b %Y %X"), "\n", sep="")
 
+    cat("\n\n\n============================================================================")
+    cat("\nAdditional information about the call:\n")
+    cat("\n1) Parameters:\n")
+    print(cbind(value = argVc))
+    
+    cat("\n2) Session Info:\n")
+    sessioninfo <- sessionInfo()
+    cat(sessioninfo$R.version$version.string,"\n")
+    cat("Main packages:\n")
+    for (pkg in names(sessioninfo$otherPkgs)) { cat(paste(pkg,packageVersion(pkg)),"\t") }; cat("\n")
+    cat("Other loaded packages:\n")
+    for (pkg in names(sessioninfo$loadedOnly)) { cat(paste(pkg,packageVersion(pkg)),"\t") }; cat("\n")
+    
+    cat("============================================================================\n")
+    
     sink()
-
+    
 } else {
+    
+    cat("\n\n\n============================================================================")
+    cat("\nAdditional information about the call:\n")
+    cat("\n1) Parameters:\n")
+    print(cbind(value = argVc))
+    
+    cat("\n2) Session Info:\n")
+    sessioninfo <- sessionInfo()
+    cat(sessioninfo$R.version$version.string,"\n")
+    cat("Main packages:\n")
+    for (pkg in names(sessioninfo$otherPkgs)) { cat(paste(pkg,packageVersion(pkg)),"\t") }; cat("\n")
+    cat("Other loaded packages:\n")
+    for (pkg in names(sessioninfo$loadedOnly)) { cat(paste(pkg,packageVersion(pkg)),"\t") }; cat("\n")
+    
+    cat("============================================================================\n")
 
     sink()
     stop("Please check the generated 'information' file")