Mercurial > repos > ethevenot > heatmap
annotate build.xml @ 2:b1667c118127 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit bbfc13f2e4fa9e7e5b562c96d0e570318d3482d9
author | ethevenot |
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date | Tue, 06 Jun 2017 11:58:43 -0400 |
parents | ad06aeed02c9 |
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rev | line source |
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0
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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1 <project name="heatmap" default="all"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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2 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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3 <property name="tool.xml" value="heatmap_config.xml"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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5 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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6 <!--~~~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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7 ~ ALL ~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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8 ~~~~~--> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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9 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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10 <target name="all"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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11 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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12 <!--~~~~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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13 ~ TEST ~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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14 ~~~~~--> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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15 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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16 <target name="test" depends="planemo.lint,planemo.test"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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17 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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18 <!--~~~~~~~~~~~~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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19 ~ PLANEMO LINT ~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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20 ~~~~~~~~~~~~~--> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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21 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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22 <target name="planemo.lint"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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23 <exec executable="planemo" failonerror="true"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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24 <arg value="lint"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
|
25 <arg value="${tool.xml}"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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26 </exec> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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27 </target> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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changeset
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28 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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29 <!--~~~~~~~~~~~~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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30 ~ PLANEMO TEST ~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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31 ~~~~~~~~~~~~~--> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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32 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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33 <target name="planemo.test" depends="planemo.conda.install"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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34 <exec executable="planemo" failonerror="true"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
|
35 <arg value="test"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
|
36 <arg value="--conda_prefix"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
|
37 <arg value="${conda.dir}"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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38 <arg value="--galaxy_branch"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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39 <arg value="release_16.01"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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40 <arg value="--conda_dependency_resolution"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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41 <arg value="${tool.xml}"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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42 </exec> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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43 </target> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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44 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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45 <!--~~~~~~~~~~~~~~~~~~~~~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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changeset
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46 ~ PLANEMO CONDA INSTALL ~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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47 ~~~~~~~~~~~~~~~~~~~~~~--> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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48 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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49 <target name="planemo.conda.install" depends="planemo.conda.init"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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50 <exec executable="planemo" failonerror="true"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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51 <arg value="conda_install"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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52 <arg value="--conda_prefix"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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53 <arg value="${conda.dir}"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
|
54 <arg value="${tool.xml}"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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55 </exec> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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56 </target> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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57 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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58 <!--~~~~~~~~~~~~~~~~~~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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59 ~ PLANEMO CONDA INIT ~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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60 ~~~~~~~~~~~~~~~~~~~--> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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61 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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62 <target name="planemo.conda.init"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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63 <exec executable="planemo" failonerror="true"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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64 <arg value="conda_init"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
|
65 <arg value="--conda_prefix"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
|
66 <arg value="${conda.dir}"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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67 </exec> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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68 </target> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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69 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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70 <!--~~~~~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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71 ~ CLEAN ~ |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
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72 ~~~~~~--> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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73 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
changeset
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74 <target name="clean"> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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75 <delete dir="${conda.dir}"/> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
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76 </target> |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
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77 |
ad06aeed02c9
planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty
ethevenot
parents:
diff
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78 </project> |