comparison heatmap_config.xml @ 1:db1d80e89156 draft

planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 29f9ccf5bd558becff5913528bb998aa7bb82d44

0:ad06aeed02c9

<tool id="Heatmap" name="Heatmap" version="2.2.0">
  <description>Heatmap of the dataMatrix</description>
  
  <requirements>
    <requirement type="package" version="3.2.2">R</requirement>
    <requirement type="package">r-batch</requirement>
  </requirements>
  
  <command><![CDATA[
  Rscript $__tool_directory__/heatmap_wrapper.R
  dataMatrix_in "$dataMatrix_in"
  sampleMetadata_in "$sampleMetadata_in"
  variableMetadata_in "$variableMetadata_in"
  
  disC "$disC"

Working example
---------------

.. class:: infomark

See the **W4M00001a_sacurine-subset-statistics** shared history in the **Shared Data/Published Histories** menu

---------------------------------------------------

----
NEWS
----

CHANGES IN VERSION 2.2.0
========================

NEW FEATURES

Creating additional files for planemo and travis running and installation validation

CHANGES IN VERSION 2.1.1
========================

Internal replacement of the as.hclust function which happened to produce error messages

 </help>
 
 <citations>
   <citation type="bibtex">@Article{Thevenot2015,
   Title                    = {Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses},
   Author                   = {Thevenot, Etienne A. and Roux, Aurelie and Xu, Ying and Ezan, Eric and Junot, Christophe},
   Journal                  = {Journal of Proteome Research},
   Year                     = {2015},

   Pages                    = {3322-3335},
   Volume                   = {14},
   
   Doi                      = {10.1021/acs.jproteome.5b00354},
   Url                      = {http://pubs.acs.org/doi/full/10.1021/acs.jproteome.5b00354}
   }</citation> 
 </citations>
  
</tool>

1:db1d80e89156

<tool id="Heatmap" name="Heatmap" version="2.2.2">
  <description>Heatmap of the dataMatrix</description>
  
  <requirements>
    <requirement type="package" version="3.2.2">R</requirement>
    <requirement type="package">r-batch</requirement>
  </requirements>

  <stdio>
    <exit_code range="1:" level="fatal" />
  </stdio>
    
  <command><![CDATA[
  Rscript $__tool_directory__/heatmap_wrapper.R
  
  dataMatrix_in "$dataMatrix_in"
  sampleMetadata_in "$sampleMetadata_in"
  variableMetadata_in "$variableMetadata_in"
  
  disC "$disC"

Working example
---------------

.. class:: infomark

See the **W4M00001a_sacurine-subset-statistics** shared history in the **Shared Data/Published Histories** menu (https://galaxy.workflow4metabolomics.org/history/list_published)

---------------------------------------------------

----
NEWS
----

CHANGES IN VERSION 2.2.2
========================

INTERNAL MODIFICATIONS

Minor internal modifications

CHANGES IN VERSION 2.2.0
========================

NEW FEATURES

Creating additional files for planemo and travis running and installation validation

CHANGES IN VERSION 2.1.1
========================

INTERNAL MODIFICATIONS

Internal replacement of the as.hclust function which happened to produce error messages

 </help>
 
 <citations>
   <citation type="bibtex">@Manual{,
   title = {R: A Language and Environment for Statistical Computing},
   author = {{R Core Team}},
   organization = {R Foundation for Statistical Computing},
   address = {Vienna, Austria},
   year = {2016},
   url = {https://www.R-project.org/},
   }</citation>
   <citation type="bibtex">@Article{Thevenot2015,
   Title                    = {Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses},
   Author                   = {Thevenot, Etienne A. and Roux, Aurelie and Xu, Ying and Ezan, Eric and Junot, Christophe},
   Journal                  = {Journal of Proteome Research},
   Year                     = {2015},

   Pages                    = {3322-3335},
   Volume                   = {14},
   
   Doi                      = {10.1021/acs.jproteome.5b00354},
   Url                      = {http://pubs.acs.org/doi/full/10.1021/acs.jproteome.5b00354}
   }</citation>
   <citation type="doi">10.1093/bioinformatics/btu813</citation>
 </citations>
  
</tool>