diff README.md @ 0:ad06aeed02c9 draft

planemo upload for repository https://github.com/workflow4metabolomics/heatmap.git commit 7e599d006e53fefb7e1b923ba8894b4fb19f9cfa-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Tue Aug 02 06:26:41 2016 -0400
@@ -0,0 +1,60 @@
+## Heatmap of the data matrix  
+#### A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) project
+
+Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/heatmap.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/heatmap).
+
+### Description
+
+**Version:** 2.2.0    
+**Date:** 2016-07-30  
+**Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team)   
+**Email:** [etienne.thevenot(at)cea.fr](mailto:[e-mail])  
+**Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354)  
+**Licence:** CeCILL  
+**Reference history:** [W4M00001a_sacurine-subset-statistics](http://galaxy.workflow4metabolomics.org/history/list_published)     
+**Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant)
+
+### Installation
+
+* Configuration file: **heatmap_config.xml**
+* Image files:
+    + **static/images/heatmap_workflowPositionImage.png**  
+    + **static/images/heatmap_workingExampleImage.png**     
+* Wrapper file: **heatmap_wrapper.R**  
+* R packages  
+    + **batch** from CRAN  
+> install.packages("batch", dep=TRUE)   
+
+### Tests
+
+The code in the wrapper can be tested by running the **tests/heatmap_tests.R** in R  
+
+### News  
+
+##### CHANGES IN VERSION 2.2.0  
+
+NEW FEATURES  
+
+    o Default method for the correlation coefficient is now 'pearson', instead of 'spearman' previously (the latter can still be selected in the advanced parameters)
+
+    o The 1-abs(correlation) dissimilarity is now available (in addition to the default '1-correlation') in case the sign of correlations between samples and between variables does not matter, as well as the euclidean, maximum, manhattan, canberra, binary, and minkowski dissimilarities
+
+    o A new red-green color scale is available
+
+***    
+    
+##### CHANGES IN VERSION 2.1.2  
+
+INTERNAL MODIFICATION  
+
+    o Creating additional files for planemo and travis validation  
+
+***  
+    
+##### CHANGES IN VERSION 2.0.2  
+
+INTERNAL MODIFICATION  
+
+    o Creating tests for R code  
+    
+***  
\ No newline at end of file