Mercurial > repos > ethevenot > multivariate
annotate build.xml @ 2:fa173e12e185 draft
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 9f4dfcdc64aa9ac2a2f6d613cc33961c02fec254-dirty
author | ethevenot |
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date | Sat, 06 Aug 2016 12:07:13 -0400 |
parents | fafba524dca6 |
children | e91de3b04320 |
rev | line source |
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0
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
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1 <project name="multivariate" default="all"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
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2 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
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3 <property name="tool.xml" value="multivariate_config.xml"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
5 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
6 <!--~~~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
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7 ~ ALL ~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
8 ~~~~~--> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
9 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
10 <target name="all"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
11 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
12 <!--~~~~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
13 ~ TEST ~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
14 ~~~~~--> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
15 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
16 <target name="test" depends="planemo.lint,planemo.test"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
17 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
18 <!--~~~~~~~~~~~~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
19 ~ PLANEMO LINT ~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
20 ~~~~~~~~~~~~~--> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
21 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
22 <target name="planemo.lint"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
23 <exec executable="planemo" failonerror="true"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
24 <arg value="lint"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
25 <arg value="${tool.xml}"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
26 </exec> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
27 </target> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
28 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
29 <!--~~~~~~~~~~~~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
30 ~ PLANEMO TEST ~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
31 ~~~~~~~~~~~~~--> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
32 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
33 <target name="planemo.test" depends="planemo.conda.install"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
34 <exec executable="planemo" failonerror="true"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
35 <arg value="test"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
36 <arg value="--conda_prefix"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
37 <arg value="${conda.dir}"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
38 <arg value="--galaxy_branch"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
39 <arg value="release_16.01"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
40 <arg value="--conda_dependency_resolution"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
41 <arg value="${tool.xml}"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
42 </exec> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
43 </target> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
44 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
45 <!--~~~~~~~~~~~~~~~~~~~~~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
46 ~ PLANEMO CONDA INSTALL ~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
47 ~~~~~~~~~~~~~~~~~~~~~~--> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
48 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
49 <target name="planemo.conda.install" depends="planemo.conda.init"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
50 <exec executable="planemo" failonerror="true"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
51 <arg value="conda_install"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
52 <arg value="--conda_prefix"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
53 <arg value="${conda.dir}"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
54 <arg value="${tool.xml}"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
55 </exec> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
56 </target> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
57 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
58 <!--~~~~~~~~~~~~~~~~~~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
59 ~ PLANEMO CONDA INIT ~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
60 ~~~~~~~~~~~~~~~~~~~--> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
61 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
62 <target name="planemo.conda.init"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
63 <exec executable="planemo" failonerror="true"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
64 <arg value="conda_init"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
65 <arg value="--conda_prefix"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
66 <arg value="${conda.dir}"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
67 </exec> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
68 </target> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
69 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
70 <!--~~~~~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
71 ~ CLEAN ~ |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
72 ~~~~~~--> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
73 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
74 <target name="clean"> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
75 <delete dir="${conda.dir}"/> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
76 </target> |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
77 |
fafba524dca6
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit 6596dbd39d20ee1962d9ebdd87eec04821239760
ethevenot
parents:
diff
changeset
|
78 </project> |