Mercurial > repos > ethevenot > multivariate
comparison README.md @ 1:da272496b32d draft
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit dbdc8c3e17ea6ef7139e77cbb6130de949ea2a05
author | ethevenot |
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date | Sat, 30 Jul 2016 12:31:20 -0400 |
parents | fafba524dca6 |
children | fa173e12e185 |
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6 Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/multivariate.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/multivariate). | 6 Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/multivariate.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/multivariate). |
7 | 7 |
8 ## Description | 8 ## Description |
9 | 9 |
10 **Version:** 2.3.2 | 10 **Version:** 2.3.4 |
11 **Date:** 2016-05-15 | 11 **Date:** 2016-07-30 |
12 **Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team) | 12 **Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team) |
13 **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr) | 13 **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr) |
14 **Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354) | 14 **Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354) |
15 **Licence:** CeCILL | 15 **Licence:** CeCILL |
16 **Reference history:** [W4M00001a_sacurine-subset-statistics](http://galaxy.workflow4metabolomics.org/history/list_published), [W4M00001b_sacurine_complete](http://galaxy.workflow4metabolomics.org/history/list_published) | |
16 **Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant) | 17 **Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant) |
17 | 18 |
18 ## Installation | 19 ## Installation |
19 | 20 |
20 * Configuration file: `multivariate_config.xml`. | 21 * Configuration file: `multivariate_config.xml`. |
30 ``` | 31 ``` |
31 | 32 |
32 + **ropls** from Bioconductor | 33 + **ropls** from Bioconductor |
33 | 34 |
34 ```r | 35 ```r |
35 install.packages("batch", dep=TRUE) | |
36 source("http://www.bioconductor.org/biocLite.R") | 36 source("http://www.bioconductor.org/biocLite.R") |
37 biocLite("ropls") | 37 biocLite("ropls") |
38 ``` | 38 ``` |
39 | 39 |
40 ## Tests | 40 ## Tests |
45 ```r | 45 ```r |
46 install.packages('RUnit', dependencies = TRUE) | 46 install.packages('RUnit', dependencies = TRUE) |
47 ``` | 47 ``` |
48 | 48 |
49 ## News | 49 ## News |
50 | |
51 ### CHANGES IN VERSION 2.3.4 | |
52 | |
53 INTERNAL MODIFICATION | |
54 | |
55 * minor update of .shed.yml | |
56 | |
57 *** | |
50 | 58 |
51 ### CHANGES IN VERSION 2.3.2 | 59 ### CHANGES IN VERSION 2.3.2 |
52 | 60 |
53 INTERNAL MODIFICATION | 61 INTERNAL MODIFICATION |
54 | 62 |