Mercurial > repos > ethevenot > multivariate
view docker/Dockerfile @ 1:da272496b32d draft
planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit dbdc8c3e17ea6ef7139e77cbb6130de949ea2a05
author | ethevenot |
---|---|
date | Sat, 30 Jul 2016 12:31:20 -0400 |
parents | fafba524dca6 |
children |
line wrap: on
line source
FROM ubuntu:14.04 MAINTAINER Etienne Thevenot (etienne.thevenot@cea.fr) # Setup package repos RUN echo "deb http://mirrors.ebi.ac.uk/CRAN/bin/linux/ubuntu trusty/" >> /etc/apt/sources.list RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 # Update and upgrade system RUN apt-get update RUN apt-get -y upgrade # Install R and other needed packages RUN apt-get -y install r-base RUN R -e "install.packages('batch', lib='/usr/lib/R/library', dependencies = TRUE, repos='http://mirrors.ebi.ac.uk/CRAN')" RUN R -e "source('http://bioconductor.org/biocLite.R') ; biocLite('ropls')" # Clone tool RUN apt-get -y install git RUN git clone -b docker https://github.com/workflow4metabolomics/multivariate /files/multivariate # Clean up RUN apt-get clean && apt-get autoremove -y && rm -rf /var/lib/{apt,dpkg,cache,log}/ /tmp/* /var/tmp/* # Define Entry point script ENTRYPOINT ["/files/multivariate/multivariate_wrapper.R"]