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changeset 1:da272496b32d draft

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planemo upload for repository https://github.com/workflow4metabolomics/multivariate.git commit dbdc8c3e17ea6ef7139e77cbb6130de949ea2a05
author ethevenot
date Sat, 30 Jul 2016 12:31:20 -0400
parents fafba524dca6
children fa173e12e185
files README.md multivariate_config.xml multivariate_wrapper.R tests/multivariate_tests.R
diffstat 3 files changed, 21 insertions(+), 6 deletions(-) [+]
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--- a/README.md	Wed Jul 27 11:22:56 2016 -0400
+++ b/README.md	Sat Jul 30 12:31:20 2016 -0400
@@ -7,12 +7,13 @@
 
 ## Description
 
-**Version:** 2.3.2  
-**Date:** 2016-05-15  
+**Version:** 2.3.4  
+**Date:** 2016-07-30  
 **Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team)   
 **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr)  
 **Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354)  
-**Licence:** CeCILL  
+**Licence:** CeCILL
+**Reference history:** [W4M00001a_sacurine-subset-statistics](http://galaxy.workflow4metabolomics.org/history/list_published), [W4M00001b_sacurine_complete](http://galaxy.workflow4metabolomics.org/history/list_published)     
 **Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant)
 
 ## Installation
@@ -32,7 +33,6 @@
   + **ropls** from Bioconductor  
   
     ```r
-    install.packages("batch", dep=TRUE)  
     source("http://www.bioconductor.org/biocLite.R")  
     biocLite("ropls")      
     ```
@@ -48,6 +48,14 @@
 
 ## News
 
+### CHANGES IN VERSION 2.3.4
+
+INTERNAL MODIFICATION  
+
+ * minor update of .shed.yml
+    
+***
+
 ### CHANGES IN VERSION 2.3.2
 
 INTERNAL MODIFICATION  
--- a/multivariate_config.xml	Wed Jul 27 11:22:56 2016 -0400
+++ b/multivariate_config.xml	Sat Jul 30 12:31:20 2016 -0400
@@ -1,4 +1,4 @@
-<tool id="Multivariate" name="Multivariate" version="2.3.2">
+<tool id="Multivariate" name="Multivariate" version="2.3.4">
 	<description>PCA, PLS and OPLS</description>
 
 	<requirements>
@@ -454,6 +454,13 @@
 NEWS
 ----
 
+CHANGES IN VERSION 2.3.4
+========================
+
+INTERNAL MODIFICATIONS
+
+Minor update in .shed.yml file
+
 CHANGES IN VERSION 2.3.2
 ========================
 
--- a/multivariate_wrapper.R	Wed Jul 27 11:22:56 2016 -0400
+++ b/multivariate_wrapper.R	Sat Jul 30 12:31:20 2016 -0400
@@ -28,7 +28,7 @@
 suppressMessages(library(ropls))
 
 if(packageVersion("ropls") < "1.4.0")
-    cat("\nWarning: new version of the 'ropls' package is available\n", sep="")
+    stop("Please use 'ropls' versions of 1.4.0 and above")
 
 ## constants
 ##----------