Mercurial > repos > ethevenot > profia
comparison test/test-profia @ 0:39ccace77270 draft
planemo upload for repository https://github.com/workflow4metabolomics/profia.git commit 2757590af8c7ba9833ba3bebd7da7f96b20d1128-dirty
| author | ethevenot |
|---|---|
| date | Sun, 26 Mar 2017 17:37:12 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:39ccace77270 |
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| 1 #!/bin/bash | |
| 2 | |
| 3 # Constants {{{1 | |
| 4 ################################################################ | |
| 5 | |
| 6 PROG_PATH=$(dirname $0) | |
| 7 | |
| 8 # MAIN {{{1 | |
| 9 ################################################################ | |
| 10 | |
| 11 $PROG_PATH/../profia_wrapper.R zipfile $PROG_PATH/../test-data/input-plasFIA.zip ppmN 2 ppmGroupN 1 fracGroupN 0.1 kI 2 dataMatrix_out $PROG_PATH/output-dataMatrix.tsv | |
| 12 | |
| 13 if ! diff "$PROG_PATH/output-dataMatrix.tsv" "$PROG_PATH/../test-data/output-dataMatrix.tsv" ; then | |
| 14 echo "Incorrect output data matrix." >&2 | |
| 15 exit 1 | |
| 16 fi |