Mercurial > repos > ethevenot > profia
diff README.md @ 2:3f8ae071bdda draft
planemo upload for repository https://github.com/workflow4metabolomics/profia.git commit 19ed25c048232776369a392ddb8c1860471acd29
author | ethevenot |
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date | Mon, 22 Jan 2018 11:32:41 -0500 |
parents | 4753e64cf694 |
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--- a/README.md Wed May 03 10:49:08 2017 -0400 +++ b/README.md Mon Jan 22 11:32:41 2018 -0500 @@ -7,11 +7,11 @@ ### Description -**Version:** 3.0.4 -**Date:** 2017-05-02 +**Version:** 3.1.0 +**Date:** 2018-01-08 **Author:** Alexis Delabriere and Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team) **Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr) -**Citation:** Delabriere A., Hohenester U., Colsch B., Junot C., Fenaille F. and Thevenot E.A. proFIA: A data preprocessing workflow for Flow Injection Analysis coupled to High-Resolution Mass Spectrometry. *submitted*. +**Citation:** Delabriere A., Hohenester U., Colsch B., Junot C., Fenaille F. and Thevenot E.A. (2017). proFIA: A data preprocessing workflow for Flow Injection Analysis coupled to High-Resolution Mass Spectrometry. *Bioinformatics*, 33:3767-3775 (https://doi.org/10.1093/bioinformatics/btx458). **Licence:** CeCILL **Reference history:** **Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant) @@ -28,15 +28,16 @@ ```r install.packages("batch", dep=TRUE) - install.packages("FNN", dep=TRUE) - install.packages("maxLik", dep=TRUE) install.packages("minpack.lm", dep=TRUE) + install.packages("missForest", dep=TRUE) install.packages("pracma", dep=TRUE) ``` + **profia** from Bioconductor ```r source("http://www.bioconductor.org/biocLite.R") + biocLite("Biobase") + biocLite("BiocParallel") biocLite("xcms") biocLite("plasFIA") biocLite("proFIA") @@ -55,6 +56,18 @@ ### News +###### CHANGES IN VERSION 3.1.0 + +NEW FEATURE + +randomForest method implemented for imputation of missing values + +###### CHANGES IN VERSION 3.0.6 + +NEW FEATURES + + * New (advanced) parameters available + ###### CHANGES IN VERSION 3.0.4 MINOR MODIFICATION