Mercurial > repos > ethevenot > qualitymetrics
annotate build.xml @ 3:acdf51018708 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit b7e47e59ea753fe9f73f2b83bcaae895b21269f6
author | ethevenot |
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date | Wed, 28 Feb 2018 09:32:42 -0500 |
parents | 596320b84315 |
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rev | line source |
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b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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1 <project name="qualitymetrics" default="all"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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2 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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3 <property name="tool.xml" value="qualitymetrics_config.xml"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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5 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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6 <!--~~~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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7 ~ ALL ~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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8 ~~~~~--> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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changeset
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9 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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10 <target name="all"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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11 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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12 <!--~~~~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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13 ~ TEST ~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
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14 ~~~~~--> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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15 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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16 <target name="test" depends="planemo.lint,planemo.test"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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17 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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18 <!--~~~~~~~~~~~~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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19 ~ PLANEMO LINT ~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
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20 ~~~~~~~~~~~~~--> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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21 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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22 <target name="planemo.lint"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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23 <exec executable="planemo" failonerror="true"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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24 <arg value="lint"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
|
25 <arg value="${tool.xml}"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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26 </exec> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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27 </target> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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28 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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29 <!--~~~~~~~~~~~~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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30 ~ PLANEMO TEST ~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
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31 ~~~~~~~~~~~~~--> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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32 |
2
596320b84315
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 95d4658e5d9dd0421c9336b2232cc81f32879621
ethevenot
parents:
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33 <target name="planemo.test"> |
0
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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34 <exec executable="planemo" failonerror="true"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
|
35 <arg value="test"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
|
36 <arg value="--conda_prefix"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
|
37 <arg value="${conda.dir}"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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38 <arg value="--galaxy_branch"/> |
2
596320b84315
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 95d4658e5d9dd0421c9336b2232cc81f32879621
ethevenot
parents:
1
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39 <arg value="release_17.05"/> |
0
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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40 <arg value="--conda_dependency_resolution"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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41 <arg value="${tool.xml}"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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42 </exec> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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43 </target> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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44 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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45 <!--~~~~~~~~~~~~~~~~~~~~~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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46 ~ PLANEMO CONDA INSTALL ~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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47 ~~~~~~~~~~~~~~~~~~~~~~--> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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48 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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49 <target name="planemo.conda.install" depends="planemo.conda.init"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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50 <exec executable="planemo" failonerror="true"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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51 <arg value="conda_install"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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52 <arg value="--conda_prefix"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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53 <arg value="${conda.dir}"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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54 <arg value="${tool.xml}"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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55 </exec> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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56 </target> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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changeset
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57 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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58 <!--~~~~~~~~~~~~~~~~~~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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59 ~ PLANEMO CONDA INIT ~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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60 ~~~~~~~~~~~~~~~~~~~--> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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changeset
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61 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
|
62 <target name="planemo.conda.init"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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63 <exec executable="planemo" failonerror="true"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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64 <arg value="conda_init"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
|
65 <arg value="--conda_prefix"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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66 <arg value="${conda.dir}"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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67 </exec> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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68 </target> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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69 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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70 <!--~~~~~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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71 ~ CLEAN ~ |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
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72 ~~~~~~--> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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73 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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74 <target name="clean"> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
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75 <delete dir="${conda.dir}"/> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
changeset
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76 </target> |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
diff
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77 |
b4f5b5bc01dd
planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit 73366dd3473c509341ab9ba1df8ba748d08a50a1
ethevenot
parents:
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78 </project> |