view runit/output/information.txt @ 3:acdf51018708 draft default tip

planemo upload for repository https://github.com/workflow4metabolomics/qualitymetrics.git commit b7e47e59ea753fe9f73f2b83bcaae895b21269f6

Start of the 'Quality Metrics' Galaxy module call: Thu 11 Jan 2018 06:23:47 PM


Data description:

observations: 9 
variables: 10 
missing: 12 
0 values (%): 0 
min: 4.04 
mean: 1.1e+08 
median: 3300 
max: 1.5e+09 

Sample types:

 blank   pool sample 
     2      2      5 


Variables: Blank mean, sd, and CV

Variables: Sample mean, sd, and CV

Variables: Blank mean over sample mean

Variables: Pool mean, sd, and CV

Variables: Pool CV over sample CV

Observations: Hotelling ellipse

Observations: Missing values

Observations: Profile deciles

Plotting

End of 'Quality Metrics' Galaxy module call: 2018-01-11 18:23:47



============================================================================
Additional information about the call:

1) Parameters:
$dataMatrix_in
[1] "./input/dataMatrix.tsv"

$sampleMetadata_in
[1] "./input/sampleMetadata.tsv"

$variableMetadata_in
[1] "./input/variableMetadata.tsv"

$sampleMetadata_out
[1] "./output/sampleMetadata.tsv"

$variableMetadata_out
[1] "./output/variableMetadata.tsv"

$figure
[1] "./output/figure.pdf"

$information
[1] "./output/information.txt"

$CV
[1] "FALSE"

$Compa
[1] TRUE

$seuil
[1] 1

$poolAsPool1L
[1] TRUE


2) Session Info:
R version 3.3.1 (2016-06-21) 
Main packages:
ropls 1.6.2 	batch 1.1.4 	
Other loaded packages:
parallel 3.3.1 	Biobase 2.34.0 	methods 3.3.1 	BiocGenerics 0.20.0 	
============================================================================