Mercurial > repos > ethevenot > transformation
diff README.md @ 0:eacea1349a7c draft
planemo upload for repository https://github.com/workflow4metabolomics/transformation.git commit 83f2d1045c0bf086bbe2de5204cd5c1d8354116f
author | ethevenot |
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date | Fri, 29 Jul 2016 12:11:01 -0400 |
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children | d9e05021553c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Fri Jul 29 12:11:01 2016 -0400 @@ -0,0 +1,38 @@ +## Transformation of the data matrix +#### A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) project + +Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/transformation.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/transformation). + +### Description + +**Version:** 2.0.2 +**Date:** 2016-07-27 +**Author:** Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team) +**Email:** [etienne.thevenot(at)cea.fr](mailto:etienne.thevenot@cea.fr) +**Citation:** Thevenot E.A., Roux A., Xu Y., Ezan E. and Junot C. (2015). Analysis of the human adult urinary metabolome variations with age, body mass index and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. *Journal of Proteome Research*, **14**:3322-3335. [doi:10.1021/acs.jproteome.5b00354](http://dx.doi.org/10.1021/acs.jproteome.5b00354) +**Licence:** CeCILL +**Reference history:** [W4M00001b_sacurine_complete](http://galaxy.workflow4metabolomics.org/history/list_published) +**Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant) + +### Installation + +* Configuration file: **transformation_config.xml** +* Image files: **static/images/transformation_workflowPositionImage.png** +* Wrapper file: **transformation_wrapper.R** +* R packages + + **batch** from CRAN +> install.packages("batch", dep=TRUE) + +### Tests + +The code in the wrapper can be tested by running the **tests/transformation_tests.R** in R + +### News + +##### CHANGES IN VERSION 2.0.2 + +INTERNAL MODIFICATION + + o Creating tests for R code + +*** \ No newline at end of file