Mercurial > repos > ethevenot > univariate

comparison runit/univariate_tests.R @ 2:09799fc16bc6 draft

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planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 2c0d4d97c208edca1ada2035a7b7af9c4eb31afe
author ethevenot
date Sat, 06 Aug 2016 12:42:42 -0400
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children 140290de7986
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1:fdefbc780d2e 2:09799fc16bc6
1 test_input_kruskal <- function() {
2
3 testDirC <- "input"
4 argLs <- list(facC = "ageGroup",
5 tesC = "kruskal",
6 adjC = "fdr",
7 thrN = "0.05")
8
9 argLs <- c(defaultArgF(testDirC), argLs)
10 outLs <- wrapperCallF(argLs)
11
12 checkEqualsNumeric(outLs[["varDF"]]["HMDB01032", "ageGroup_kruskal_senior.experienced_pva"], 0.1231246, tolerance = 1e-6)
13
14 }
15
16 test_example1_wilcoxDif <- function() {
17
18 testDirC <- "example1"
19 argLs <- list(facC = "jour",
20 tesC = "wilcoxon",
21 adjC = "fdr",
22 thrN = "0.05")
23
24 argLs <- c(defaultArgF(testDirC), argLs)
25 outLs <- wrapperCallF(argLs)
26
27 checkEqualsNumeric(outLs[["varDF"]]["MT3", "jour_wilcoxon_J3.J10_dif"], 0.216480042, tolerance = 1e-8)
28
29 }
30
31 test_example1_ttestFdr <- function() {
32
33 testDirC <- "example1"
34 argLs <- list(facC = "jour",
35 tesC = "ttest",
36 adjC = "fdr",
37 thrN = "0.05")
38
39 argLs <- c(defaultArgF(testDirC), argLs)
40 outLs <- wrapperCallF(argLs)
41
42 checkEqualsNumeric(outLs[["varDF"]]["MT3", "jour_ttest_J3.J10_fdr"], 0.7605966, tolerance = 1e-6)
43
44 }