Mercurial > repos > ethevenot > univariate

comparison runit/univariate_runtests.R @ 3:140290de7986 draft

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planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit 27bc6157f43574f038b3fb1be1f46ce4786e24b1
author ethevenot
date Sun, 30 Oct 2016 14:17:09 -0400
parents 09799fc16bc6
children
comparison
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2:09799fc16bc6 3:140290de7986
81 defaultArgLs[["sampleMetadata_in"]] <- file.path(dirname(scriptPathC), testInDirC, "sampleMetadata.tsv") 81 defaultArgLs[["sampleMetadata_in"]] <- file.path(dirname(scriptPathC), testInDirC, "sampleMetadata.tsv")
82 if(file.exists(file.path(dirname(scriptPathC), testInDirC, "variableMetadata.tsv"))) 82 if(file.exists(file.path(dirname(scriptPathC), testInDirC, "variableMetadata.tsv")))
83 defaultArgLs[["variableMetadata_in"]] <- file.path(dirname(scriptPathC), testInDirC, "variableMetadata.tsv") 83 defaultArgLs[["variableMetadata_in"]] <- file.path(dirname(scriptPathC), testInDirC, "variableMetadata.tsv")
84 84
85 defaultArgLs[["variableMetadata_out"]] <- file.path(dirname(scriptPathC), testOutDirC, "variableMetadata.tsv") 85 defaultArgLs[["variableMetadata_out"]] <- file.path(dirname(scriptPathC), testOutDirC, "variableMetadata.tsv")
86 defaultArgLs[["figure"]] <- file.path(dirname(scriptPathC), testOutDirC, "figure.pdf")
86 defaultArgLs[["information"]] <- file.path(dirname(scriptPathC), testOutDirC, "information.txt") 87 defaultArgLs[["information"]] <- file.path(dirname(scriptPathC), testOutDirC, "information.txt")
87 88
88 defaultArgLs 89 defaultArgLs
89 90
90 } 91 }