Mercurial > repos > ethevenot > univariate
comparison test/test-univ @ 4:3017385625f6 draft
planemo upload for repository https://github.com/workflow4metabolomics/univariate.git commit a81d4cc1df719dcc66def660927abda74972afaa
author | ethevenot |
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date | Thu, 11 Jan 2018 10:21:17 -0500 |
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3:140290de7986 | 4:3017385625f6 |
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1 #!/bin/bash | |
2 | |
3 # Constants {{{1 | |
4 ################################################################ | |
5 | |
6 PROG_PATH=$(dirname $0) | |
7 | |
8 # MAIN {{{1 | |
9 ################################################################ | |
10 | |
11 $PROG_PATH/../univariate_wrapper.R dataMatrix_in $PROG_PATH/../test-data/dataMatrix.tsv sampleMetadata_in $PROG_PATH/../test-data/sampleMetadata.tsv variableMetadata_in $PROG_PATH/../test-data/variableMetadata.tsv facC qual tesC kruskal adjC fdr thrN 0.05 variableMetadata_out $PROG_PATH/outputVariableMetadata.tsv | |
12 | |
13 if ! diff "$PROG_PATH/outputVariableMetadata.tsv" "$PROG_PATH/../test-data/output-variableMetadata.tsv" ; then | |
14 echo "Incorrect output variable metadata." >&2 | |
15 exit 1 | |
16 fi |