Mercurial > repos > evan > bwa_wrappers

diff bwa_wrapper.xml @ 1:2ba834228e9b draft

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Uploaded
author evan
date Fri, 06 Jun 2014 12:39:56 -0400
parents 8d92246f41bb
children
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--- a/bwa_wrapper.xml	Thu Jun 05 15:15:34 2014 -0400
+++ b/bwa_wrapper.xml	Fri Jun 06 12:39:56 2014 -0400
@@ -68,7 +68,7 @@
           --rgpu="${params.readGroup.rgpu}"
           --rgsm="${params.readGroup.rgsm}"
         #end if
-	#if $params.readGroup.specReadGroup == "from_file"
+        #if $params.readGroup.specReadGroup == "from_file"
           --meta_tsv="$params.readGroup.metadata_tsv"
         #end if
       #end if
@@ -134,6 +134,7 @@
         <conditional name="readGroup">
           <param name="specReadGroup" type="select" label="Specify the read group for this file? (samse/sampe -r)">
             <option value="yes">Yes</option>
+            <option value="from_file">From File</option>
             <option value="no" selected="True">No</option>
           </param>
           <when value="yes">