# HG changeset patch
# User fabad
# Date 1462224560 14400
# Node ID 48c6cb07caf3e8a0fc7505d8ea8744810059e980
# Parent  b08085b9bf6071e604c85d810cd63d5b6526d37b
Deleted selected files

diff -r b08085b9bf60 -r 48c6cb07caf3 sparql_uniprot.xml
--- a/sparql_uniprot.xml	Mon May 02 17:08:29 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,53 +0,0 @@
-<tool id="sparql_uniprot" name="Uniprot Sparql" version="0.1.0">
-  <description>Perform a search into uniprot database using its sparql interface.</description>
-  <command interpreter="python">sparql_uniprot.py "${protein}" "${proteinName}" "${geneName}" "${organismName}" "${diseaseAnnotation}" "${domainName}" "${similarityAnnotation}" "${locationAnnotation}" "${functionAnnotation}" "${pharmaceuticalAnnotation}" "${output}"</command>
-  <inputs>
-    <param name="protein" type="text" label="Uniprot Identifier"/>
-
-    <param name="proteinName" type="text" label="Protein Name">
-	<!-- sanitizer para que nos deje usar el caracter $ -->
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="geneName" type="text" label="Gene Name">
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="organismName" type="text" label="Organism">
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="diseaseAnnotation" type="text" label="Disease Annotation">
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="domainName" type="text" label="Domain">
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="similarityAnnotation" type="text" label="Similarity Annotation">
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="locationAnnotation" type="text" label="Location Annotation">
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="functionAnnotation" type="text" label="Function Annotation">
-	<sanitizer sanitize="False"/>
-    </param>
-
-    <param name="pharmaceuticalAnnotation" type="text" label="Pharmaceutical Annotation">
-	<sanitizer sanitize="False"/>
-    </param>
-  </inputs>
-
-  <outputs>
-    <data format="tabular" name="output" />
-  </outputs>
-
-  <help>
-	With this tool you can search proteins using regular expressions by the following fields: uniprot identifier, protein name, gene name , organism name, disease annotation, domain name, similarity annotation, location annotation, function annotation or pharmaceutical annotationText. You can fill the fields you want and the tool will return all the data found in uniprot by filling the other fields. Results will be stored in a tabular format. If you want to search the exact match of a field you should use ^parameter$, for example ^insulin$.
-  </help>
-
-</tool>