# HG changeset patch
# User fabad
# Date 1462225202 14400
# Node ID d052e34a190779c2a0e31bb7f41102457f8eb91e
# Parent 3de5035fc2f15ed2f27c1dfefb18a72103208f1a
Deleted selected files
diff -r 3de5035fc2f1 -r d052e34a1907 sparql_uniprot.xml
--- a/sparql_uniprot.xml Mon May 02 17:31:17 2016 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,56 +0,0 @@
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- Perform a search into uniprot database using its sparql interface.
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- SPARQLWrapper
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- sparql_uniprot.py "${protein}" "${proteinName}" "${geneName}" "${organismName}" "${diseaseAnnotation}" "${domainName}" "${similarityAnnotation}" "${locationAnnotation}" "${functionAnnotation}" "${pharmaceuticalAnnotation}" "${output}"
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- With this tool you can search proteins using regular expressions by the following fields: uniprot identifier, protein name, gene name , organism name, disease annotation, domain name, similarity annotation, location annotation, function annotation or pharmaceutical annotationText. You can fill the fields you want and the tool will return all the data found in uniprot by filling the other fields. Results will be stored in a tabular format. If you want to search the exact match of a field you should use ^parameter$, for example ^insulin$.
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diff -r 3de5035fc2f1 -r d052e34a1907 tool_dependencies.xml
--- a/tool_dependencies.xml Mon May 02 17:31:17 2016 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
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- Install SPARQLWrapper via virtualenv.
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- SPARQLWrapper==1.7.6
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