# HG changeset patch
# User fabad
# Date 1462228476 14400
# Node ID e0d22d87082b44c6a608ed4e661464cfd06b4f62
# Parent f1f51efc4f6757923b73d4d76cf4aaec8eb92c98
Deleted selected files
diff -r f1f51efc4f67 -r e0d22d87082b sparql_uniprot.xml
--- a/sparql_uniprot.xml Mon May 02 17:56:55 2016 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,57 +0,0 @@
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- Perform a search into uniprot database using its sparql interface.
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- python
- SPARQLWrapper
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- sparql_uniprot.py "${protein}" "${proteinName}" "${geneName}" "${organismName}" "${diseaseAnnotation}" "${domainName}" "${similarityAnnotation}" "${locationAnnotation}" "${functionAnnotation}" "${pharmaceuticalAnnotation}" "${output}"
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- With this tool you can search proteins using regular expressions by the following fields: uniprot identifier, protein name, gene name , organism name, disease annotation, domain name, similarity annotation, location annotation, function annotation or pharmaceutical annotationText. You can fill the fields you want and the tool will return all the data found in uniprot by filling the other fields. Results will be stored in a tabular format. If you want to search the exact match of a field you should use ^parameter$, for example ^insulin$.
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diff -r f1f51efc4f67 -r e0d22d87082b tool_dependencies.xml
--- a/tool_dependencies.xml Mon May 02 17:56:55 2016 -0400
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
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- Install SPARQLWrapper via virtualenv.
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- SPARQLWrapper==1.7.6
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