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comparison query.py @ 14:9ec4acef30ed draft

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Uploaded 20180424
author fabio
date Tue, 24 Apr 2018 13:29:11 -0400
parents 19ac771cf32a
children ba9d0fc8657f
comparison
equal deleted inserted replaced
13:4646e524cd43 14:9ec4acef30ed
104 else: # all-some 104 else: # all-some
105 accessions_list = accessions_list + str(hit) + "\n"; 105 accessions_list = accessions_list + str(hit) + "\n";
106 if is_sabutan: 106 if is_sabutan:
107 sorted_accessions = sorted(accessions_dict, key=lambda i: float(accessions_dict[i]["score"]), reverse=True); 107 sorted_accessions = sorted(accessions_dict, key=lambda i: float(accessions_dict[i]["score"]), reverse=True);
108 for acc in sorted_accessions: 108 for acc in sorted_accessions:
109 accessions_list = accessions_list + str(acc) + "\t" + str(accessions_dict[acc]) + "\n"; 109 accessions_list = accessions_list + str(acc) + "\t" + str(accessions_dict[acc]["fraction"]) + "\t" + str(accessions_dict[acc]["score"]) + "\n";
110 with open(output_file_path, 'w') as out: 110 with open(output_file_path, 'w') as out:
111 out.write(accessions_list.strip()); 111 out.write(accessions_list.strip());
112 return sys.exit(OK_EXIT_CODE); 112 return sys.exit(OK_EXIT_CODE);
113 else: 113 else:
114 return raiseException( ERR_EXIT_CODE, "Unable to query the remote server. Please try again in a while.", output_dir_path, str(options.errorfile) ); 114 return raiseException( ERR_EXIT_CODE, "Unable to query the remote server. Please try again in a while.", output_dir_path, str(options.errorfile) );