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comparison gdcwebapp.xml @ 18:2c58e3cc1b30 draft

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Uploaded 20170601
author fabio
date Thu, 01 Jun 2017 17:45:01 -0400
parents 3eabece82abb
children 8c0633c02758
comparison
equal deleted inserted replaced
17:1224f3d9b5c7 18:2c58e3cc1b30
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> 2 <tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> 3 <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7.10">python</requirement> 5 <requirement type="package" version="2.7.10">python</requirement>
6 </requirements> 6 </requirements>
7 <stdio> 7 <stdio>
14 python ${__tool_directory__}/json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "tmp" 14 python ${__tool_directory__}/json_data_source_mod.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "tmp"
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" > 17 <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" >
18 <display>Go to GDCWebApp service $GALAXY_URL</display> 18 <display>Go to GDCWebApp service $GALAXY_URL</display>
19 <param name="URL" type="hidden" value="" />
20 </inputs> 19 </inputs>
21 <outputs> 20 <outputs>
22 <data name="output1" format="auto" label="${tool.name} Output Data" hidden="True" /> 21 <data name="output1" format="auto" label="${tool.name} Output Data" hidden="True" />
23 <collection name="list_output" type="list:list" label="${tool.name} Output Collection"> 22 <collection name="list_output" type="list:list" label="${tool.name} Output Collection">
24 <discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)_(?P&lt;ext&gt;[^_]+)_(?P&lt;dbkey&gt;[^_]+)" ext="auto" visible="False" directory="tmp" /> 23 <discover_datasets pattern="(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)_(?P&lt;ext&gt;[^_]+)_(?P&lt;dbkey&gt;[^_]+)" ext="auto" visible="False" directory="tmp" />