comparison gdcwebapp.xml @ 36:94fb18e41385 draft

Uploaded 20170614

35:5c10dbaa9cc5

<?xml version="1.0"?>
<tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
    <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
    <requirements>
        <requirement type="package" version="2.7.10">python</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
        <exit_code range=":-1" />
    </stdio>
    <command>
        <![CDATA[
            mkdir -p tmp && 
            python ${__tool_directory__}/json_collect_data_source.py "${__app__.config.output_size_limit}" --json_param_file "${output1}" --path "." --appdata "tmp"
        ]]>
    </command>
    <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
        <display>Go to GDCWebApp service $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />

36:94fb18e41385

<?xml version="1.0"?>
<tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
    <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
    <requirements>
        <requirement type="package" version="2.7.10">python</requirement>
        <requirement type="package" version="1.0.0">galaxy_json_collect_data_source</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
        <exit_code range=":-1" />
    </stdio>
    <command>
        <![CDATA[
            mkdir -p tmp && 
            python json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'
        ]]>
    </command>
    <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
        <display>Go to GDCWebApp service $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />