Mercurial > repos > fabio > gdcwebapp
changeset 18:2c58e3cc1b30 draft
Uploaded 20170601
| author | fabio |
|---|---|
| date | Thu, 01 Jun 2017 17:45:01 -0400 |
| parents | 1224f3d9b5c7 |
| children | 5244d3a1a441 |
| files | ._gdcwebapp.xml ._json_data_source_mod.py gdcwebapp.xml json_data_source_mod.py |
| diffstat | 4 files changed, 2 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/gdcwebapp.xml Thu Jun 01 13:07:25 2017 -0400 +++ b/gdcwebapp.xml Thu Jun 01 17:45:01 2017 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> +<tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> <requirements> <requirement type="package" version="2.7.10">python</requirement> @@ -16,7 +16,6 @@ </command> <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" > <display>Go to GDCWebApp service $GALAXY_URL</display> - <param name="URL" type="hidden" value="" /> </inputs> <outputs> <data name="output1" format="auto" label="${tool.name} Output Data" hidden="True" />
--- a/json_data_source_mod.py Thu Jun 01 13:07:25 2017 -0400 +++ b/json_data_source_mod.py Thu Jun 01 17:45:01 2017 -0400 @@ -116,7 +116,7 @@ extension = splitext( filename )[1] # pattern: (?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)_(?P<ext>[^_]+)_(?P<dbkey>[^_]+) if (len(extension) > 0): - filename = (filename[0:len(filename)-(len(extension)+1)]).replace(".", "-") + "_" + extension + filename = (filename[0:len(filename)-(len(extension)+1)]).replace(".", "-") + "." + extension + "_" + extension else: extension = "auto" filename_with_collection_prefix = archive_name + "_" + filename + "_" + db_key