Mercurial > repos > fabio > gdcwebapp

changeset 42:3858a4e5693f draft

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Uploaded 20170622
author fabio
date Thu, 22 Jun 2017 14:19:35 -0400
parents 7f55f83f72da
children 73d593ff91e4
files gdcwebapp.xml tool_dependencies.xml
diffstat 2 files changed, 1 insertions(+), 27 deletions(-) [+]
line wrap: on
line diff
--- a/gdcwebapp.xml	Wed Jun 14 18:02:34 2017 -0400
+++ b/gdcwebapp.xml	Thu Jun 22 14:19:35 2017 -0400
@@ -3,7 +3,7 @@
     <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
     <requirements>
         <requirement type="package" version="2.7.10">python</requirement>
-        <requirement type="package" version="1.0.0">galaxy_json_collect_data_source</requirement>
+        <requirement type="package" version="1.0.0">json-collect-data-source</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
--- a/tool_dependencies.xml	Wed Jun 14 18:02:34 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,26 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="python" version="2.7.10">
-        <repository changeset_revision="bd7165ea6526" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="galaxy_json_collect_data_source" version="1.0.0">
-        <install version="1.0">
-            <actions>
-                <action sha256sum="c3035964913a8bfe4f196b133f9cde38bf220b97018737a4b761acc95ebf4e1e" target_filename="json_collect_data_source.py" type="download_by_url">https://raw.githubusercontent.com/fabio-cumbo/galaxy-json-collect-data-source/master/json_collect_data_source.py</action>
-                <action type="move_file">
-                    <source>json_collect_data_source.py</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="chmod">
-                    <file mode="755">$INSTALL_DIR/bin/json_collect_data_source.py</file>
-                </action>
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            This tool is able to receive multiple datasets (optionally with their metadata) in a single query. It allows to handle archives (gz, bz2, tar, and zip) organizing their content in a collection.
-        </readme>
-    </package>
-</tool_dependency>