Mercurial > repos > fabio > gdcwebapp

changeset 38:423b844d302e draft

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Uploaded 20170614
author fabio
date Wed, 14 Jun 2017 17:58:17 -0400
parents a1e6f711031a
children ecea475a575d
files ._tool_dependencies.xml gdcwebapp.xml
diffstat 2 files changed, 2 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
Binary file ._tool_dependencies.xml has changed
--- a/gdcwebapp.xml	Wed Jun 14 16:20:10 2017 -0400
+++ b/gdcwebapp.xml	Wed Jun 14 17:58:17 2017 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
+<tool name="GDCWebApp" id="data_source_gdcwebapp_dev" tool_type="data_source_async" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True">
     <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description>
     <requirements>
         <requirement type="package" version="2.7.10">python</requirement>
@@ -9,12 +9,7 @@
         <exit_code range="1:" />
         <exit_code range=":-1" />
     </stdio>
-    <command>
-        <![CDATA[
-            mkdir -p tmp && 
-            python json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'
-        ]]>
-    </command>
+    <command>json_collect_data_source.py '${__app__.config.output_size_limit}' --json_param_file '${output1}' --path '.' --appdata 'tmp'</command>
     <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php">
         <display>Go to GDCWebApp service $GALAXY_URL</display>
         <param name="GALAXY_URL" type="baseurl" value="/async/data_source_gdcwebapp" />