Mercurial > repos > fabio > gdcwebapp
changeset 0:e34213a50c6f draft
Uploaded 20170524
| author | fabio |
|---|---|
| date | Wed, 24 May 2017 15:26:26 -0400 |
| parents | |
| children | 0fe0f0ed1287 |
| files | ._gdcwebapp.xml ._tool_dependencies.xml gdcwebapp.xml tool_dependencies.xml |
| diffstat | 4 files changed, 31 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gdcwebapp.xml Wed May 24 15:26:26 2017 -0400 @@ -0,0 +1,22 @@ +<?xml version="1.0"?> +<tool name="GDCWebApp" id="data_source_gdcwebapp" tool_type="data_source" hidden="False" display_interface="False" version="1.0.0" force_history_refresh="True"> + <description>an intuitive interface to filter, extract, and convert Genomic Data Commons experiments</description> + <requirements> + <requirement type="package" version="2.7.10">python</requirement> + <requirement type="package" version="1.0.0">galaxy_json_data_source</requirement> + </requirements> + <stdio> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> + <version_command>json_data_source.py --version</version_command> + <command>json_data_source.py "${__app__.config.output_size_limit}" --json_param_file "${output}" --path "."</command> + <inputs check_values="False" action="http://bioinf.iasi.cnr.it/gdcwebapp/app.php" > + <display>Go to GDCWebApp service $GALAXY_URL</display> + <param name="URL" type="hidden" value="" /> + </inputs> + <outputs> + <data name="output" format="auto" label="${tool.name} JSON output file" /> + </outputs> + <options sanitize="False" refresh="True" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed May 24 15:26:26 2017 -0400 @@ -0,0 +1,9 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="python" version="2.7.10"> + <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="galaxy_json_data_source" version="1.0.0"> + <repository changeset_revision="5ea54764a6b9" name="package_galaxy_json_data_source" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>