Mercurial > repos > fabio > iwtomics

comparison plotwithscale.xml @ 66:0b07bbe59b14 draft

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Uploaded 20170609
author fabio
date Fri, 09 Jun 2017 11:57:33 -0400
parents bd5ba4648ac0
children 971bb414cc4f
comparison
equal deleted inserted replaced
65:ba2b17e5792b 66:0b07bbe59b14
10 <exit_code range="20" level="fatal" description="Wrong feature ids." /> 10 <exit_code range="20" level="fatal" description="Wrong feature ids." />
11 <exit_code range="30" level="fatal" description="Two scale thresholds selected for the same test and feature." /> 11 <exit_code range="30" level="fatal" description="Two scale thresholds selected for the same test and feature." />
12 <exit_code range="40" level="fatal" description="Scale threshold too high." /> 12 <exit_code range="40" level="fatal" description="Scale threshold too high." />
13 <exit_code range="50" level="fatal" description="Group by 'test' but selected features with different resolution." /> 13 <exit_code range="50" level="fatal" description="Group by 'test' but selected features with different resolution." />
14 <exit_code range="60" level="fatal" description="Summary plot error. Please try again." /> 14 <exit_code range="60" level="fatal" description="Summary plot error. Please try again." />
15 <regex match="Error" level="fatal" description="An error has occurred. Please try again." /> 15 <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." />
16 </stdio> 16 </stdio>
17 17
18 <command> 18 <command>
19 <![CDATA[ 19 <![CDATA[
20 Rscript $__tool_directory__/plotwithscale.R adjustedpvalue="${adjustedpvalue}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}" 20 Rscript $__tool_directory__/plotwithscale.R adjustedpvalue="${adjustedpvalue}" iwtomicsrespdf="${iwtomicsrespdf}" iwtomicssumpdf="${iwtomicssumpdf}"