comparison plotwithscale.xml @ 74:2bb6b44093ba draft

Uploaded 20170619

73:156b29da2f0b

  <description>on Test Scale</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <stdio>
    <exit_code range="-1" level="fatal" description="Missing IWTomics package. Please be sure to have it installed before using this tool." />
    <exit_code range="10" level="fatal" description="Wrong test ids." />
    <exit_code range="20" level="fatal" description="Wrong feature ids." />
    <exit_code range="30" level="fatal" description="Two scale thresholds selected for the same test and feature." />
    <exit_code range="40" level="fatal" description="Scale threshold too high." />
    <exit_code range="50" level="fatal" description="Group by 'test' but selected features with different resolution." />
    <exit_code range="60" level="fatal" description="Summary plot error. Please try again." />
    <regex match="Error" source="both" level="fatal" description="An error has occurred. Please try again." />
  </stdio>

  <command>
<![CDATA[
    Rscript '$__tool_directory__/plotwithscale.R' adjustedpvalue='${adjustedpvalue}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}'
      iwtomicsrdata='${rdata}'
      iwtomicstests='${testids}'
      iwtomicsselectedfeatures='${featureids}'

74:2bb6b44093ba

  <description>on Test Scale</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  
  <command detect_errors="exit_code">
<![CDATA[
    Rscript '$__tool_directory__/plotwithscale.R' adjustedpvalue='${adjustedpvalue}' iwtomicsrespdf='${iwtomicsrespdf}' iwtomicssumpdf='${iwtomicssumpdf}'
      iwtomicsrdata='${rdata}'
      iwtomicstests='${testids}'
      iwtomicsselectedfeatures='${featureids}'